Tightening of knots in proteins.

نویسندگان

  • Joanna I Sułkowska
  • Piotr Sułkowski
  • P Szymczak
  • Marek Cieplak
چکیده

We perform theoretical studies of stretching of 20 proteins with knots within a coarse-grained model. The knot's ends are found to jump to well defined sequential locations that are associated with sharp turns, whereas in homopolymers they diffuse around and eventually slide off. The waiting times of the jumps are increasingly stochastic as the temperature is raised. Knots typically do not return to their native locations when a protein is released after stretching.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Tightening slip knots in raw and degummed silk to increase toughness without losing strength

Knots are fascinating topological elements, which can be found in both natural and artificial systems. While in most of the cases, knots cannot be loosened without breaking the strand where they are tightened, herein, attention is focused on slip or running knots, which on the contrary can be unfastened without compromising the structural integrity of their hosting material. Two different topol...

متن کامل

Three-Dimensional Entanglement: Knots, Knits and Nets

Three-dimensional entanglement, including knots, periodic arrays of woven filaments (weavings) and periodic arrays of interpenetrating networks (nets), forms an integral part of the analysis of structure within the natural sciences. This thesis constructs a catalogue of 3-periodic entanglements via a scaffold of Triply-Periodic Minimal Surfaces (TPMS). The two-dimensional Hyperbolic plane can b...

متن کامل

Tightening of DNA knots by supercoiling facilitates their unknotting by type II DNA topoisomerases.

Using numerical simulations, we compare properties of knotted DNA molecules that are either torsionally relaxed or supercoiled. We observe that DNA supercoiling tightens knotted portions of DNA molecules and accentuates the difference in curvature between knotted and unknotted regions. The increased curvature of knotted regions is expected to make them preferential substrates of type IIA topois...

متن کامل

On the groundstate energy of tight knots

New results on the groundstate energy of tight, magnetic knots are presented. Magnetic knots are defined as tubular embeddings of the magnetic field in an ideal, perfectly conducting, incompressible fluid. An orthogonal, curvilinear coordinate system is introduced and the magnetic energy is determined by the poloidal and toroidal components of the magnetic field. Standard minimization of the ma...

متن کامل

An eddy-current-based sensor for preventing knots in metallic wire drawing processes

During metallic wire drawing processes, the presence of knots and the failure to detect them can lead to long production interruptions, significant economic losses and a lower quality of final product. Consequently, there is a pressing need to develop methods for real-time detection and prevention of this fault. In this paper a sensor to prevent the formation of knots during the metallic wire d...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:
  • Physical review letters

دوره 100 5  شماره 

صفحات  -

تاریخ انتشار 2008